Complete genome sequence analysis of the Malacosoma neustria nucleopolyhedrovirus from Turkey.
Identifieur interne : 000F86 ( Main/Exploration ); précédent : 000F85; suivant : 000F87Complete genome sequence analysis of the Malacosoma neustria nucleopolyhedrovirus from Turkey.
Auteurs : Donus Gencer [Turquie] ; Remziye Nalcacioglu [Turquie] ; Zihni Demirbag [Turquie] ; Ismail Demir [Turquie]Source :
- Virus genes [ 1572-994X ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- Wicri :
- geographic : Turquie.
English descriptors
- KwdEn :
- MESH :
- chemical : Biological Control Agents, DNA, Viral.
- geographic : Turkey.
- genetics : Nucleopolyhedroviruses.
- isolation & purification : Nucleopolyhedroviruses.
- virology : Moths.
- Animals, Genome, Viral, Phylogeny, Sequence Analysis, DNA.
Abstract
The lackey moth, Malacosoma neustria (Linnaeus, 1758), a worldwide pest, causes extensive economic losses particularly on hazelnut, plum, oak, poplar, and willow trees. A baculovirus, Malacosoma neustria nucleopolyhedrovirus (ManeNPV-T2), has been isolated from the larvae collected in Turkey and appears to have a potential as a microbial control agent. In this study, we describe the complete genome sequence of ManeNPV-T2 and compare it to other sequenced baculovirus genomes. The ManeNPV-T2 genome is a circular double-stranded DNA molecule of 130,202 bp, has 38.2% G + C, and is predicted to contain 131 putative open reading frames (ORFs) each with a coding capacity of more then 50 amino acids. There are 27 ORFs with unknown function of which 6 are unique to ManeNPV-T2. Eleven homologous regions (hrs) and two bro genes (bro-a and bro-b) were identified in the genome. There are two homologues of chaB and nicotinamide riboside kinase-1 genes, separated from themselves with a few nucleotides. Additionally, ac145, thought to be per os infectivity factor (pif) gene, is also found as two homologues. All 38 core genes are found in the ManeNPV-T2 genome. The phylogenetic tree of ManeNPV-T2 in relation to 50 other baculoviruses whose genomes have been completely sequenced showed ManeNPV-T2 to be closely related to the group II NPVs. This study expands our knowledge on baculoviruses, describes the characterization ManeNPV, and ultimately contributes to the registration of this virus as a microbial pesticide.
DOI: 10.1007/s11262-018-1595-7
PubMed: 30155661
Affiliations:
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séquence d'ADN (MeSH)</term><term>Animaux (MeSH)</term><term>Génome viral (MeSH)</term><term>Papillons de nuit (virologie)</term><term>Phylogenèse (MeSH)</term><term>Turquie (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Biological Control Agents</term><term>DNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Turkey</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Nucleopolyhedroviruses</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Nucleopolyhedroviruses</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Papillons de nuit</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Moths</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genome, Viral</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" 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A baculovirus, Malacosoma neustria nucleopolyhedrovirus (ManeNPV-T2), has been isolated from the larvae collected in Turkey and appears to have a potential as a microbial control agent. In this study, we describe the complete genome sequence of ManeNPV-T2 and compare it to other sequenced baculovirus genomes. The ManeNPV-T2 genome is a circular double-stranded DNA molecule of 130,202 bp, has 38.2% G + C, and is predicted to contain 131 putative open reading frames (ORFs) each with a coding capacity of more then 50 amino acids. There are 27 ORFs with unknown function of which 6 are unique to ManeNPV-T2. Eleven homologous regions (hrs) and two bro genes (bro-a and bro-b) were identified in the genome. There are two homologues of chaB and nicotinamide riboside kinase-1 genes, separated from themselves with a few nucleotides. Additionally, ac145, thought to be per os infectivity factor (pif) gene, is also found as two homologues. All 38 core genes are found in the ManeNPV-T2 genome. The phylogenetic tree of ManeNPV-T2 in relation to 50 other baculoviruses whose genomes have been completely sequenced showed ManeNPV-T2 to be closely related to the group II NPVs. This study expands our knowledge on baculoviruses, describes the characterization ManeNPV, and ultimately contributes to the registration of this virus as a microbial pesticide.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30155661</PMID><DateCompleted><Year>2018</Year><Month>12</Month><Day>11</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1572-994X</ISSN><JournalIssue CitedMedium="Internet"><Volume>54</Volume><Issue>5</Issue><PubDate><Year>2018</Year><Month>Oct</Month></PubDate></JournalIssue><Title>Virus genes</Title><ISOAbbreviation>Virus Genes</ISOAbbreviation></Journal><ArticleTitle>Complete genome sequence analysis of the Malacosoma neustria nucleopolyhedrovirus from Turkey.</ArticleTitle><Pagination><MedlinePgn>706-718</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11262-018-1595-7</ELocationID><Abstract><AbstractText>The lackey moth, Malacosoma neustria (Linnaeus, 1758), a worldwide pest, causes extensive economic losses particularly on hazelnut, plum, oak, poplar, and willow trees. A baculovirus, Malacosoma neustria nucleopolyhedrovirus (ManeNPV-T2), has been isolated from the larvae collected in Turkey and appears to have a potential as a microbial control agent. In this study, we describe the complete genome sequence of ManeNPV-T2 and compare it to other sequenced baculovirus genomes. The ManeNPV-T2 genome is a circular double-stranded DNA molecule of 130,202 bp, has 38.2% G + C, and is predicted to contain 131 putative open reading frames (ORFs) each with a coding capacity of more then 50 amino acids. There are 27 ORFs with unknown function of which 6 are unique to ManeNPV-T2. Eleven homologous regions (hrs) and two bro genes (bro-a and bro-b) were identified in the genome. There are two homologues of chaB and nicotinamide riboside kinase-1 genes, separated from themselves with a few nucleotides. Additionally, ac145, thought to be per os infectivity factor (pif) gene, is also found as two homologues. All 38 core genes are found in the ManeNPV-T2 genome. The phylogenetic tree of ManeNPV-T2 in relation to 50 other baculoviruses whose genomes have been completely sequenced showed ManeNPV-T2 to be closely related to the group II NPVs. This study expands our knowledge on baculoviruses, describes the characterization ManeNPV, and ultimately contributes to the registration of this virus as a microbial pesticide.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gencer</LastName><ForeName>Donus</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Biology, Faculty of Sciences, Karadeniz Technical University, 61080, Trabzon, Turkey.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nalcacioglu</LastName><ForeName>Remziye</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Biology, Faculty of Sciences, Karadeniz Technical University, 61080, Trabzon, Turkey.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Demirbag</LastName><ForeName>Zihni</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Department of Biology, Faculty of Sciences, Karadeniz Technical University, 61080, Trabzon, Turkey.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Demir</LastName><ForeName>Ismail</ForeName><Initials>I</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-6227-0039</Identifier><AffiliationInfo><Affiliation>Department of Biology, Faculty of Sciences, Karadeniz Technical University, 61080, Trabzon, Turkey. idemir@ktu.edu.tr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>08</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Virus Genes</MedlineTA><NlmUniqueID>8803967</NlmUniqueID><ISSNLinking>0920-8569</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D061046">Biological Control 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MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014421" MajorTopicYN="N" Type="Geographic">Turkey</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Alphabaculovirus</Keyword><Keyword MajorTopicYN="N">Complete genome</Keyword><Keyword MajorTopicYN="N">Hrs</Keyword><Keyword MajorTopicYN="N">Malacosoma neustria NPV isolate</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>04</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>08</Month><Day>09</Day></PubMedPubDate><PubMedPubDate 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sort="Demir, Ismail" uniqKey="Demir I" first="Ismail" last="Demir">Ismail Demir</name><name sortKey="Demirbag, Zihni" sort="Demirbag, Zihni" uniqKey="Demirbag Z" first="Zihni" last="Demirbag">Zihni Demirbag</name><name sortKey="Nalcacioglu, Remziye" sort="Nalcacioglu, Remziye" uniqKey="Nalcacioglu R" first="Remziye" last="Nalcacioglu">Remziye Nalcacioglu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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